Transcription Factor Family: SET
Marmorstein. 2003: The methylation of lysine residues on histone tails is catalyzed by proteins containing a conserved SET domain. A recent flurry of structures of SET domain proteins has revealed a new protein fold and a scaffold for understanding catalysis and substrate binding by these enzymes. The prospect that histone methylation might form an epigenetic code and the implicated involvement of SET domain proteins in cancer assures that structure-function studies of these enzymes will continue until their detailed mechanism of action is determined.
There are 46 transcription factors which have been predicted for 3D structure in this family:
Transcription Factor ID | Gene Description |
AT1G01920.1 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839313 |
AT1G01920.2 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839313 |
AT1G02580.1 | Description:   MEA (MEDEA); sequence-specific DNA binding / transcription factor;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839422 |
AT1G04050.1 | Description:   SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839320 |
AT1G14030.1 | Description:   ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 837964 |
AT1G17770.1 | Description:   SUVH7 (SU(VAR)3-9 HOMOLOG 7); DNA binding / histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 838355 |
AT1G24610.1 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839075 |
AT1G73100.1 | Description:   SUVH3 (SU(VAR)3-9 HOMOLOG 3); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 843641 |
AT1G76710.1 | Description:   SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844005 |
AT1G76710.2 | Description:   SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844005 |
AT1G77300.1 | Description:   EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844066 |
AT1G77300.2 | Description:   EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844066 |
AT2G05900.1 | Description:   SDG11 (SET DOMAIN-CONTAINING PROTEIN 11); histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 815142 |
AT2G18850.1 | Description:   hypothetical protein;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816400 |
AT2G22740.1 | Description:   SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816804 |
AT2G22740.2 | Description:   SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816804 |
AT2G23380.1 | Description:   CLF (CURLY LEAF); transcription factor;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816870 |
AT2G24740.1 | Description:   SDG21 (SET DOMAIN GROUP 21); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 817010 |
AT2G33290.1 | Description:   SUVH2 (SU(VAR)3-9 HOMOLOG 2); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 817892 |
AT2G35160.1 | Description:   SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 818083 |
AT2G44150.1 | Description:   ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 819021 |
AT3G03750.1 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821169 |
AT3G03750.2 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821169 |
AT3G04380.1 | Description:   SUVR4; histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 819593 |
AT3G04380.2 | Description:   SUVR4; histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 819593 |
AT3G07670.1 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 819958 |
AT3G55080.1 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 824674 |
AT3G56570.1 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 824824 |
AT3G59960.1 | Description:   ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 825166 |
AT4G02020.1 | Description:   SWN (SWINGER); transcription factor;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 828165 |
AT4G13460.1 | Description:   SUVH9; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 826978 |
AT4G13460.2 | Description:   SUVH9; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 826978 |
AT4G15180.1 | Description:   SDG2 (SET DOMAIN-CONTAINING PROTEIN 2);  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 827183 |
AT4G30860.1 | Description:   SDG4 (SET DOMAIN GROUP 4); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 829210 |
AT5G04940.1 | Description:   SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 830376 |
AT5G04940.2 | Description:   SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 830376 |
AT5G13960.1 | Description:   SUVH4 (SU(VAR)3-9 HOMOLOG 4); double-stranded methylated DNA binding / histone methyltransferase(H3-K9 specific) / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831244 |
AT5G14260.1 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831276 |
AT5G14260.2 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831276 |
AT5G14260.3 | Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831276 |
AT5G17240.1 | Description:   SDG40 (SET DOMAIN GROUP 40);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831588 |
AT5G42400.1 | Description:   SDG25 (SET DOMAIN PROTEIN 25);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834246 |
AT5G43990.1 | Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422 |
AT5G43990.2 | Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422 |
AT5G43990.3 | Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422 |
AT5G43990.4 | Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422 |