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Transcription Factor Family: SET

Marmorstein. 2003: The methylation of lysine residues on histone tails is catalyzed by proteins containing a conserved SET domain. A recent flurry of structures of SET domain proteins has revealed a new protein fold and a scaffold for understanding catalysis and substrate binding by these enzymes. The prospect that histone methylation might form an epigenetic code and the implicated involvement of SET domain proteins in cancer assures that structure-function studies of these enzymes will continue until their detailed mechanism of action is determined.

There are 46 transcription factors which have been predicted for 3D structure in this family:

Transcription Factor IDGene Description
AT1G01920.1Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839313
AT1G01920.2Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839313
AT1G02580.1Description:   MEA (MEDEA); sequence-specific DNA binding / transcription factor;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839422
AT1G04050.1Description:   SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839320
AT1G14030.1Description:   ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 837964
AT1G17770.1Description:   SUVH7 (SU(VAR)3-9 HOMOLOG 7); DNA binding / histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 838355
AT1G24610.1Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 839075
AT1G73100.1Description:   SUVH3 (SU(VAR)3-9 HOMOLOG 3); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 843641
AT1G76710.1Description:   SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844005
AT1G76710.2Description:   SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844005
AT1G77300.1Description:   EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844066
AT1G77300.2Description:   EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific);  Organism: Arabidopsis thaliana;  Chromosome: 1;  GeneType: Protein Coding;  NCBI gene id: 844066
AT2G05900.1Description:   SDG11 (SET DOMAIN-CONTAINING PROTEIN 11); histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 815142
AT2G18850.1Description:   hypothetical protein;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816400
AT2G22740.1Description:   SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816804
AT2G22740.2Description:   SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816804
AT2G23380.1Description:   CLF (CURLY LEAF); transcription factor;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 816870
AT2G24740.1Description:   SDG21 (SET DOMAIN GROUP 21); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 817010
AT2G33290.1Description:   SUVH2 (SU(VAR)3-9 HOMOLOG 2); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 817892
AT2G35160.1Description:   SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 818083
AT2G44150.1Description:   ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 2;  GeneType: Protein Coding;  NCBI gene id: 819021
AT3G03750.1Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821169
AT3G03750.2Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 821169
AT3G04380.1Description:   SUVR4; histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 819593
AT3G04380.2Description:   SUVR4; histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 819593
AT3G07670.1Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 819958
AT3G55080.1Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 824674
AT3G56570.1Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 824824
AT3G59960.1Description:   ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4); histone-lysine N-methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 3;  GeneType: Protein Coding;  NCBI gene id: 825166
AT4G02020.1Description:   SWN (SWINGER); transcription factor;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 828165
AT4G13460.1Description:   SUVH9; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 826978
AT4G13460.2Description:   SUVH9; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 826978
AT4G15180.1Description:   SDG2 (SET DOMAIN-CONTAINING PROTEIN 2);  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 827183
AT4G30860.1Description:   SDG4 (SET DOMAIN GROUP 4); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 4;  GeneType: Protein Coding;  NCBI gene id: 829210
AT5G04940.1Description:   SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 830376
AT5G04940.2Description:   SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 830376
AT5G13960.1Description:   SUVH4 (SU(VAR)3-9 HOMOLOG 4); double-stranded methylated DNA binding / histone methyltransferase(H3-K9 specific) / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831244
AT5G14260.1Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831276
AT5G14260.2Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831276
AT5G14260.3Description:   SET domain-containing protein;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831276
AT5G17240.1Description:   SDG40 (SET DOMAIN GROUP 40);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 831588
AT5G42400.1Description:   SDG25 (SET DOMAIN PROTEIN 25);  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834246
AT5G43990.1Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422
AT5G43990.2Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422
AT5G43990.3Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422
AT5G43990.4Description:   SUVR2; histone-lysine N-methyltransferase/ zinc ion binding;  Organism: Arabidopsis thaliana;  Chromosome: 5;  GeneType: Protein Coding;  NCBI gene id: 834422